Bioconductor – RIPSeekerData

DOI: 10.18129/B9.bioc.RIPSeekerData  

 

This package is for version 3.9 of Bioconductor;
for the stable, up-to-date release version, see
RIPSeekerData.

test data for RIPSeeker

Bioconductor version: 3.9

The RIP-seq data in BAM format are the test data for the package RIPSeeker. The data correspond to two RIP-seq experiments, namely PRC2 and CCNT1. Raw data from NCBI Gene Expression Omnibus under accession numbers GSE17064 for PRC2 and in-house for CCNT1.

Author: Yue Li

Maintainer: Alejandro Reyes <reyes at embl.de>

Citation (from within R,
enter citation("RIPSeekerData")):

Installation

To install this package, start R (version
“3.6”) and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RIPSeekerData")

For older versions of R, please refer to the appropriate
Bioconductor release.

Documentation

To view documentation for the version of this package installed
in your system, start R and enter:

browseVignettes("RIPSeekerData")

 

PDF

R Script

RIP-seq datasets for testing RIPSeeker package
PDF   Reference Manual

Details

Package Archives

Follow
Installation
instructions to use this
package in your R session.


Read more here: Source link