Bioconductor – FoldGO

DOI: 10.18129/B9.bioc.FoldGO  

 

Package for Fold-specific GO Terms Recognition

Bioconductor version: Release (3.13)

FoldGO is a package designed to annotate gene sets derived from expression experiments and identify fold-change-specific GO terms.

Author: Daniil Wiebe <daniil.wiebe at gmail.com> [aut, cre]

Maintainer: Daniil Wiebe <daniil.wiebe at gmail.com>

Citation (from within R,
enter citation("FoldGO")):

Installation

To install this package, start R (version
“4.1”) and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("FoldGO")

For older versions of R, please refer to the appropriate
Bioconductor release.

Documentation

To view documentation for the version of this package installed
in your system, start R and enter:

browseVignettes("FoldGO")

 

HTML

R Script

FoldGO: a tool for fold-change-specific functional enrichment analysis
PDF   Reference Manual
Text   NEWS

Details

biocViews DifferentialExpression, GO, GeneExpression, Software
Version 1.10.0
In Bioconductor since BioC 3.8 (R-3.5) (3 years)
License GPL-3
Depends R (>= 4.0)
Imports topGO(>= 2.30.1), ggplot2 (>= 2.2.1), tidyr (>= 0.8.0), stats, methods
LinkingTo
Suggests knitr, rmarkdown, devtools, kableExtra
SystemRequirements
Enhances
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