allele balance gatk
Hi,
I am trying to calculate allele balance for both the heterozygous (.40 to .60 ) and homozygous base through vcf file.
plz let me know how to achieve it through gatk.
I tried using FilterVCF(picard) command as follows
–I inputFile.vcf –MIN_AB -O outputfile.
I would really appreciate any help.
Regards,
Sabeen
• 13 views
Read more here: Source link