allele balance gatk

allele balance gatk

0

Hi,

I am trying to calculate allele balance for both the heterozygous (.40 to .60 ) and homozygous base through vcf file.
plz let me know how to achieve it through gatk.

I tried using FilterVCF(picard) command as follows

I inputFile.vcf –MIN_AB -O outputfile.

I would really appreciate any help.

Regards,
Sabeen


balance


gatk


NGS


Allele

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