Problem with BAM file headers

Problem with BAM file headers

2

Hello Everyone,

I have noticed an issue with my BAM file headers, where the @RG line is either mal-formed or is missing entirely. I think I can sed the files that are mal-formed, and add the sample names necessary to complete my further analyses in GATK. But is there a way to add an entire line to the headers?

Thanks,


SAM


GATK


BAM

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