DOI: 10.18129/B9.bioc.wateRmelon
This package is for version 3.11 of Bioconductor;
for the stable, up-to-date release version, see
wateRmelon.
Illumina 450 methylation array normalization and metrics
Bioconductor version: 3.11
15 flavours of betas and three performance metrics, with methods for objects produced by methylumi and minfi packages.
Author: Leonard C Schalkwyk, Ruth Pidsley, Chloe CY Wong, with functions contributed by Nizar Touleimat, Matthieu Defrance, Andrew Teschendorff, Jovana Maksimovic, Tyler Gorrie-Stone, Louis El Khoury
Maintainer: Leo <lschal at essex.ac.uk>
Citation (from within R,
enter citation("wateRmelon")):
Installation
To install this package, start R (version
“4.0”) and enter:
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("wateRmelon")
For older versions of R, please refer to the appropriate
Bioconductor release.
Documentation
To view documentation for the version of this package installed
in your system, start R and enter:
browseVignettes("wateRmelon")
Details
| biocViews | DNAMethylation, Microarray, Preprocessing, QualityControl, Software, TwoChannel |
| Version | 1.32.0 |
| In Bioconductor since | BioC 2.12 (R-3.0) (7.5 years) |
| License | GPL-3 |
| Depends | R (>= 2.10), Biobase, limma, methods, matrixStats, methylumi, lumi, ROC, IlluminaHumanMethylation450kanno.ilmn12.hg19, illuminaio |
| Imports | Biobase |
| LinkingTo | |
| Suggests | RPMM, IlluminaHumanMethylationEPICanno.ilm10b2.hg19, IlluminaHumanMethylationEPICmanifest, irlba |
| SystemRequirements | |
| Enhances | minfi |
| URL | |
| Depends On Me | bigmelon, skewr |
| Imports Me | ChAMP, MEAT |
| Suggests Me | RnBeads |
| Links To Me | |
| Build Report |
Package Archives
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