GIAB Benchmark (High Confidence) Bed Filles

GIAB Benchmark (High Confidence) Bed Filles

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Hi all,

I havent used Genome in a Bottle for a couple of years. When I did use it, I recall I would download samples in VCF format for:

  1. AshkenaziTrio (three each)
  2. NA12878 (only one)
  3. ChineseTrio (three each)

I would then download what used to be called a high-confidence region bed file and intersect each of the VCF files against this. For some reason, it seems like each of these associated files are already labeled as “benchmarked.”

Can anybody help me understand what’s up now and if I’m misremembering how I went about this a couple of years ago.

Thanks!


SNPS


GIAB


variants

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