How to download data for visualising and analysing in RINalyzer in Cytoscape.
I am new to this plugin in Cytoscape. I want to visualise RIN from pdb and analyze the network. According to the tutorial we can download daat from RIN data websever. But when I am trying to fetch data rinalyzer.de/rindata.php from this source, no data gets downloaded. Is there any other way to access this data or can we generate the same data in any other way.
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Greetings,
You are correct — it looks like the RING web server is no longer functional. You should be able to create a RIN by using Chimera and the structureViz2 Cytoscape app. Install UCSF Chimera (chimera.ucsf.edu/download.html) and then go to the Cytoscape app store and download structureViz2. Open your structure in Chimera and then you should be able to generate the RIN using structureViz2.
— scooter
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