‘package ‘limma’ could not be loaded’

trinity run_DE_analysis.pl Failed with error: ‘package ‘limma’ could not be loaded’

1

Hi Experts,
can someone please help me with this error while running run_DE_analysis.pl for DESeq2 analysis

Loading required package: edgeR
    Loading required package: limma
    Error: package or namespace load failed for ‘limma’:
    .onLoad failed in loadNamespace() for 'limma', details:
    call: library.dynam("limma", pkgname, libname)
    error: shared object ‘limma.dylib’ not found
    Failed with error:  ‘package ‘limma’ could not be loaded’
    In addition: Warning messages:
    1: package ‘edgeR’ was built under R version 3.6.2 
    2: package ‘limma’ was built under R version 3.6.2 
    Error: With R version 3.5 or greater, install Bioconductor packages using BiocManager; see https://bioconductor.org/install
    Execution halted
    Error, cmd: Rscript GSE123456.matrix.disease_vs_healthy.DESeq2.Rscript died with ret (256)  at run_DE_analysis.pl line 758.

the same is working on other machines but not on this perticular one. DESeq2, edgeR and limma are already installed in R and working . error is same for trinity 13.1 or 13.2.


run_DE_analysis.pl


trinity

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