Statistics on RNAseq data

Statistics on RNAseq data

2

Hi

I would like to know whether you can do statistical tests (e.g. ANOVAS etc.) on the TPM/RPKM counts of RNAseq data?

Thanks


on


Statistics


data


RNAseq

• 58 views

This is not recommended due to a few underlying problems with RNA-seq data that include compositional bias, library size differences, and correlation between mean and variance. I won’t go into these concepts in detail but use software designed to account for these problems such as DESeq2 or edgeR. Their manuals will have more information on the above concepts.


Login
before adding your answer.

Traffic: 2228 users visited in the last hour

Read more here: Source link