Bam indexing error-the samtools index command for just 1 chromosome is also not working in this case, the following error is showing [E::hts_idx_push] Region 536871288..536871299 cannot be stored in a bai index. Try using a csi index with min_shift = 14, n_lvls >= 6 samtools index: failed to create index for P2R1R2_aln_sorted.bam”: Numerical result out of range.

Are you using the latest version of samtools and HTSlib? If not, please specify.

(run samtools --version)

Please describe your environment.

• OS (run uname -sr on Linux/Mac OS or wmic os get Caption, Version on Windows)
• machine architecture (run uname -m on Linux/Mac OS or wmic os get OSArchitecture on Windows)
• compiler (run gcc --version or clang --version)

Please specify the steps taken to generate the issue, the command you are running and the relevant output.