How to build a CompressedGRangesList with cdsstart/cdsend using custom txdb?
Hello Biostars Community,
How do I build a
CompressedGRanges List with cdsstart/cdsend in listData using a custom txdb using
I think this may be a simple
GenomicFeatures task, but this is my first time doing this so I am having trouble. I have tried a bunch of times by just guessing-and-checking, but have not had success yet.
Below is an example of how I want my object to look (please see right below listData)
Below is my best attempt (after multiple other tries):
GRList <- transcriptsBy(mm39.txdb, by = "cds")
Help would really be appreciated. Thank you in advance!
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