How to build a CompressedGRangesList with cdsstart/cdsend using custom txdb?

How to build a CompressedGRangesList with cdsstart/cdsend using custom txdb?

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Hello Biostars Community,

How do I build a CompressedGRanges List with cdsstart/cdsend in listData using a custom txdb using GenomicFeatures?

I think this may be a simple GenomicFeatures task, but this is my first time doing this so I am having trouble. I have tried a bunch of times by just guessing-and-checking, but have not had success yet.

Below is an example of how I want my object to look (please see right below listData)
cdstart/cdsend

Below is my best attempt (after multiple other tries):

GRList <- transcriptsBy(mm39.txdb, by = "cds")

mytry

Help would really be appreciated. Thank you in advance!

-Pratik


GenomicFeatures


GenomicRanges

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