Bioconductor – fcScan

DOI: 10.18129/B9.bioc.fcScan  

This package is for version 3.12 of Bioconductor;
for the stable, up-to-date release version, see
fcScan.

fcScan for detecting clusters of coordinates with user defined options

Bioconductor version: 3.12

This package is used to detect combination of genomic coordinates falling within a user defined window size along with user defined overlap between identified neighboring clusters. It can be used for genomic data where the clusters are built on a specific chromosome or specific strand. Clustering can be performed with a “greedy” option allowing thus the presence of additional sites within the allowed window size.

Author: Abdullah El-Kurdi <ak161 at aub.edu.lb> Ghiwa khalil <gk39 at aub.edu.lb> Georges Khazen <gkhazen at lau.edu.lb> Pierre Khoueiry <pk17 at aub.edu.lb>

Maintainer: Pierre Khoueiry <pk17 at aub.edu.lb> Abdullah El-Kurdi <ak161 at aub.edu.lb>

Installation

To install this package, start R (version
“4.0”) and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("fcScan")

For older versions of R, please refer to the appropriate
Bioconductor release.

Documentation

To view documentation for the version of this package installed
in your system, start R and enter:

browseVignettes("fcScan")

Details

Package Archives

Follow
Installation instructions to use this
package in your R session.