How to rename the elements in columns(txdb)?
Hello Biostars Community,
I made a txdb object using:
mm39.txdb <- makeTxDbFromEnsembl(organism = "Mus musculus")
and then made the CompressedGRangesList
:
txns <- GRangesList(cds(mm39.txdb, columns = c("CDSSTART","CDSEND")))
I am trying to figure out how to rename CDSSTART
to cdsStart
and CDSEND
to cdsEnd
. Help? Please?
The reason for this renaming is so that nothing “breaks” in the package when plugging in the final data files it requires.
I feel like this is such a simple task, but I am not sure exactly to do it… I’ve probably been trying to figure out this tiny thing for like 2 hours now… I tried exploring GenomeInfoDb
for something similar to
seqlevelsStyle(mm39.txdb) <- "UCSC"
No success, yet…
Thank you in advance!
-Pratik
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