A shiny GUI for MSGFplus
Bioconductor version: Release (3.5)
This package makes it possible to perform analyses using the MSGFplus package in a GUI environment. Furthermore it enables the user to investigate the results using interactive plots, summary statistics and filtering. Lastly it exposes the current results to another R session so the user can seamlessly integrate the gui into other workflows.
Author: Thomas Lin Pedersen
Maintainer: Thomas Lin Pedersen <thomasp85 at gmail.com>
Citation (from within R,
enter citation("MSGFgui")
):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("MSGFgui")
Documentation
Details
biocViews | GUI, MassSpectrometry, Proteomics, Software, Visualization |
Version | 1.10.0 |
In Bioconductor since | BioC 3.0 (R-3.1) (3 years) |
License | GPL (>= 2) |
Depends | mzR, xlsx |
Imports | shiny, mzID(>= 1.2), MSGFplus, shinyFiles (>= 0.4.0), tools |
LinkingTo | |
Suggests | knitr, testthat |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | RforProteomics |
Build Report |
Package Archives
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Installation instructions to use this
package in your R session.
Read more here: Source link