Bioconductor – MSGFgui

DOI: 10.18129/B9.bioc.MSGFgui  

 

A shiny GUI for MSGFplus

Bioconductor version: Release (3.5)

This package makes it possible to perform analyses using the MSGFplus package in a GUI environment. Furthermore it enables the user to investigate the results using interactive plots, summary statistics and filtering. Lastly it exposes the current results to another R session so the user can seamlessly integrate the gui into other workflows.

Author: Thomas Lin Pedersen

Maintainer: Thomas Lin Pedersen <thomasp85 at gmail.com>

Citation (from within R,
enter citation("MSGFgui")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MSGFgui")

Documentation

Details

biocViews GUI, MassSpectrometry, Proteomics, Software, Visualization
Version 1.10.0
In Bioconductor since BioC 3.0 (R-3.1) (3 years)
License GPL (>= 2)
Depends mzR, xlsx
Imports shiny, mzID(>= 1.2), MSGFplus, shinyFiles (>= 0.4.0), tools
LinkingTo
Suggests knitr, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me RforProteomics
Build Report  

Package Archives

Follow
Installation
instructions to use this
package in your R session.


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