This is the development version of GEOexplorer; to use it, please install the devel version of Bioconductor.
GEOexplorer: an R/Bioconductor package for gene expression analysis and visualisation
Bioconductor version: Development (3.14)
GEOexplorer is a Shiny app that enables exploratory data analysis and differential gene expression of gene expression analysis on microarray gene expression datasets held on the GEO database. The outputs are interactive graphs that enable users to explore the results of the analysis. The development of GEOexplorer was made possible because of the excellent code provided by GEO2R (https: //www.ncbi.nlm.nih.gov/geo/geo2r/).
Maintainer: Guy Hunt <guypwhunt1992 at gmail.com>
Citation (from within R,
To install this package, start R (version
“4.1”) and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") # The following initializes usage of Bioc devel BiocManager::install(version='devel') BiocManager::install("GEOexplorer")
For older versions of R, please refer to the appropriate
To view documentation for the version of this package installed
in your system, start R and enter:
|biocViews||DifferentialExpression, GeneExpression, MicroRNAArray, Microarray, Software, mRNAMicroarray|
|In Bioconductor since||BioC 3.14 (R-4.1)|
|Depends||shiny, limma, Biobase, plotly|
|Imports||DT, htmltools, factoextra, heatmaply, maptools, pheatmap, scales, shinyHeatmaply, shinybusy, shinyBS, ggplot2, stringr, umap, GEOquery, impute, grDevices, stats, graphics, utils, vembedr|
|Suggests||rmarkdown, knitr, usethis, testthat (>= 3.0.0)|
|Depends On Me|
|Links To Me|
Installation instructions to use this
package in your R session.
Read more here: Source link