Bioconductor – systemPipeRdata

DOI: 10.18129/B9.bioc.systemPipeRdata  

This package is for version 3.9 of Bioconductor;
for the stable, up-to-date release version, see
systemPipeRdata.

systemPipeRdata: NGS workflow templates and sample data

Bioconductor version: 3.9

systemPipeRdata is a helper package to generate with a single command NGS workflow templates that are intended to be used by its parent package systemPipeR. The latter is an environment for building end-to-end analysis pipelines with automated report generation for next generation sequence (NGS) applications such as RNA-Seq, RIBO-Seq, ChIP-Seq, VAR-Seq and many others. Detailed examples for using systemPipeRdata are given in systemPipeR’s overview vignette.

Author: Thomas Girke

Maintainer: Thomas Girke <thomas.girke at ucr.edu>

Installation

To install this package, start R (version
“3.6”) and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("systemPipeRdata")

For older versions of R, please refer to the appropriate
Bioconductor release.

Documentation

To view documentation for the version of this package installed
in your system, start R and enter:

browseVignettes("systemPipeRdata")

Details

Package Archives

Follow
Installation instructions to use this
package in your R session.