How to retrieved protein Fasta sequence from accession number by Entrez
This are the some the accession number of protein. Firstly i dont know what kind of accession number is this. beacuse usually protein accession number start with XP_/NP_.
Problem arise when i try the following command using the accession number given above:
- esearch -db protein -query “AF131201” | efetch -format fasta > output.fasta
- esearch -db nuccore -query “AF131201” | elink -target protein | efetch -db protein -format fasta
- Or directly submitting a bunch of accession number file to Entrez batch.
But i got nothing.
Reason for the error is very sure due to the accession number i used.
Can somebody help a way to solve this.
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