Since the weekend I’ve been getting an "NAs introduced by coercion"
error message when i run the pathfindR package. An example of some of my data is
Gene.symbol <- c("ACAA2", "ACADVL", "ACAT1", "ACOT9", "ACOX1", "ADH5",
"AKR1A1")
logFC <- c("3.3", "3.9", "1.5", "1.7", "2.4", "1.9", "1.7")
adj.P.Val <- c("0.02", "0.03", "0.02", "0.007", "0.01", "0.03", "0.03")
PSEA.DXB11 <- data.frame(Gene.symbol, logFC, adj.P.Val)
PathfindR is executed with
PSEA_results.DXB11 <- run_pathfindR(PSEA.DXB11, output_dir = ("C:/PETER PROJECT/3g. Mass Spec Processing (Comparison of K1 v DXB11)/Results/PathfindR/DXB11 p Values/1. Attached"))
which results in
NAs introduced by coercion
I’m running version 1.6.2. and rebooted my laptop to no effect.
Any suggestions would be appreciated. I’m due to submit my PhD thesis in October and need this analysis.
Thanks
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