Tajima’D and low-density SNP data
I am quite new to analysis of SNP data 🙂 My case is a bit particular because I only have genotypes from a few number of SNPs (~130) and more importantly, I do NOT have the associated DNA sequences because genotyping was performed through mass-spectrometry (and not sequencing!)
I was wondering if I still could use information from allele frequency spectrum and, for example, compute Tajima’s D on my dataset?
Thank you very much for your enlightment!
Have a good day,
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