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This package is for version 3.4 of Bioconductor;
for the stable, up-to-date release version, see
MotIV.
Motif Identification and Validation
Bioconductor version: 3.4
This package makes use of STAMP for comparing a set of motifs to a given database (e.g. JASPAR). It can also be used to visualize motifs, motif distributions, modules and filter motifs.
Author: Eloi Mercier, Raphael Gottardo
Maintainer: Eloi Mercier <emercier at bcgsc.ca>, Raphael Gottardo <rgottard at fhcrc.org>
Citation (from within R,
enter citation("MotIV")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MotIV")
Documentation
To view documentation for the version of this package installed
in your system, start R and enter:
browseVignettes("MotIV")
Details
| biocViews | ChIPSeq, ChIPchip, GenomicSequence, Microarray, MotifAnnotation, Software |
| Version | 1.30.0 |
| In Bioconductor since | BioC 2.6 (R-2.11) (7 years) |
| License | GPL-2 |
| Depends | R (>= 2.10), BiocGenerics(>= 0.1.0) |
| Imports | graphics, grid, methods, S4Vectors, IRanges(>= 1.13.5), Biostrings(>= 1.24.0), lattice, rGADEM, utils |
| LinkingTo | |
| Suggests | rtracklayer |
| SystemRequirements | GNU Scientific Library >= 1.6 (www.gnu.org/software/gsl/) |
| Enhances | |
| URL | |
| Depends On Me | motifStack |
| Imports Me | |
| Suggests Me | MotifDb |
| Build Report |
Package Archives
Follow
Installation instructions to use this
package in your R session.
Read more here: Source link