Bioconductor – pdInfoBuilder

Platform Design Information Package Builder

Bioconductor version: 2.5

Builds platform design information packages. These consist of a SQLite database containing feature-level data such as x, y position on chip and featureSet ID. The database also incorporates featureSet-level annotation data. The products of this packages are used by the oligo pkg.

Author: Seth Falcon, Benilton Carvalho with contributions by Vince Carey and Matt Settles

Maintainer: Benilton Carvalho <bcarvalh at jhsph.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("pdInfoBuilder")

To cite this package in a publication, start R and enter:

    citation("pdInfoBuilder")

Documentation

PDF

R Script

Building Annotation Packages with pdInfoBuilder for Use with the oligo Package

PDF

R Script

PDInfo Package Building Affymetrix Mapping Chips
PDF   Reference Manual

Details

Package Downloads

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