compare SV results across samples

compare SV results across samples – Manta, Delly


Hi folks,

I have Delly and Manta results for a cohort of WGS tumour libraries. Some of the libraries are derived from the same sources using different methods in the lab and I want to be able to compare/contrast the sets of SV calls generated by the tools.

Is there any magic sauce out there that can take in Manta or Delly results from multiple libraries and create Venn diagram like results? I can imagine such a tool would split the candidate calls into subsets corresponding to the different types of SVs and then does either exact or approximate matching to determine if a variant is common to multiple files. Is there anything out there that will take care of this?






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