Ensembl VEP Plugin not working

Ensembl VEP Plugin not working

0

Hi all… I’m using SubsetVCF plugin to extract some fields from my VCF file when using VEP annotator. I’ve noticed that using VCFv4.1, the plugin works fine but not with VCFv4.2.
Are there any limitations to the VCF version that impacts the plugin? Does anyone have a clue on that?

I’m calling it like this: --plugin SubsetVCF,file=${i}.vcf.gz,name=${i},filter=0,fields=DP%SB


VCF


VEP

• 40 views

Read more here: Source link