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This package is for version 3.4 of Bioconductor;
for the stable, up-to-date release version, see
ChIPComp.
Quantitative comparison of multiple ChIP-seq datasets
Bioconductor version: 3.4
ChIPComp detects differentially bound sharp binding sites across multiple conditions considering matching control.
Author: Hao Wu, Li Chen, Zhaohui S.Qin, Chi Wang
Maintainer: Li Chen <li.chen at emory.edu>
Citation (from within R,
enter citation("ChIPComp")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ChIPComp")
Documentation
To view documentation for the version of this package installed
in your system, start R and enter:
browseVignettes("ChIPComp")
Details
| biocViews | ChIPSeq, Coverage, DataImport, Genetics, MultipleComparison, Sequencing, Software, Transcription |
| Version | 1.4.0 |
| In Bioconductor since | BioC 3.2 (R-3.2) (1.5 years) |
| License | GPL |
| Depends | R (>= 3.2.0), GenomicRanges, IRanges, rtracklayer, GenomeInfoDb, S4Vectors |
| Imports | Rsamtools, limma, BSgenome.Hsapiens.UCSC.hg19, BSgenome.Mmusculus.UCSC.mm9, BiocGenerics |
| LinkingTo | |
| Suggests | BiocStyle, RUnit |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow
Installation instructions to use this
package in your R session.
Read more here: Source link
