compare two vcf files
Hi.
I have a problem
I want to compare the rs numbers in two vcf files.
so
I want to check which of the Rs numbers are in the top 10 percent.
I don’t know what to do. Can you help me if I have tools or if I have to look at the blog?
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comm -12 <(bcftools query -f '%IDn' in1.vcf | sort |uniq) <(bcftools query -f '%IDn' in2.vcf | sort |uniq)
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