PC p values in JackStrawPlot in Seurat are not in order
Hi,
I got the Seurat object, then I did:
pbmc <- JackStraw(pbmc, num.replicate = 100)
pbmc <- ScoreJackStraw(pbmc, dims = 1:20)
And when I did:
JackStrawPlot(pbmc, dims = 1:15)
The plot looks like this:
As you can see, the p values are not in order (from small to big) like the tutorial in Seurat tutorial. I wonder why this could happen and how to solve this?
Thanks very much!
Leran
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