This package is for version 3.4 of Bioconductor;
for the stable, up-to-date release version, see
Outlier detection in multiple sequence alignments
Bioconductor version: 3.4
Performs outlier detection of sequences in a multiple sequence alignment using bootstrap of predefined distance metrics. Outlier sequences can make downstream analyses unreliable or make the alignments less accurate while they are being constructed. This package implements the OD-seq algorithm proposed by Jehl et al (doi 10.1186/s12859-015-0702-1) for aligned sequences and a variant using string kernels for unaligned sequences.
Author: José Jiménez
Maintainer: José Jiménez <jose at jimenezluna.com>
Citation (from within R,
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("odseq")
To view documentation for the version of this package installed
in your system, start R and enter:
|A quick tutorial to outlier detection in MSAs|
Installation instructions to use this
package in your R session.
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