Best tools for calling structural variants from 2 assemblies?

Best tools for calling structural variants from 2 assemblies?

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Dear community,

I have the fasta files of 2 assemblies of the human genome (for example hg19 and hg38). What would be the best tools to call structural variants from these 2 fasta files? Most of the tools I know are designed to call variants using shot-gun sequencing reads…

Thanks in advance~


genetics


variants


genomics


comparative


population


evolution

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