DOI: 10.18129/B9.bioc.PAIRADISE
This package is for version 3.9 of Bioconductor;
for the stable, up-to-date release version, see
PAIRADISE.
PAIRADISE: Paired analysis of differential isoform expression
Bioconductor version: 3.9
This package implements the PAIRADISE procedure for detecting differential isoform expression between matched replicates in paired RNA-Seq data.
Author: Levon Demirdjian, Shihao Shen, Ying Nian Wu, Yi Xing
Maintainer: Qiang Hu <Qiang.Hu at roswellpark.org>, Levon Demirdjian <levondem at ucla.edu>
Citation (from within R,
enter citation("PAIRADISE")):
Installation
To install this package, start R (version
“3.6”) and enter:
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("PAIRADISE")
For older versions of R, please refer to the appropriate
Bioconductor release.
Documentation
To view documentation for the version of this package installed
in your system, start R and enter:
browseVignettes("PAIRADISE")
Details
| biocViews | AlternativeSplicing, DifferentialExpression, ImmunoOncology, RNASeq, Software, StatisticalMethod |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.9 (R-3.6) ( |
| License | MIT + file LICENSE |
| Depends | R (>= 3.6), nloptr |
| Imports | SummarizedExperiment, S4Vectors, stats, methods, abind, BiocParallel |
| LinkingTo | |
| Suggests | testthat, knitr, rmarkdown, BiocStyle |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report |
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