How to use “SingleR” on the marker genes from `FindAllMarkers` for each cluster?
Hi,
I tried to use SingleR to identify cell types for clusters. I have the table of results from FindAllMakers
of Seurat
package.
I know that I can use:
SingleR(GetAssayData(seurat.object,
assay = assay, slot = "data"), clusters = Idents(seurat.object),
ref = hpca.se, labels = hpca.se$label.main)
But is there any way I can utilize the markers for each cluster to define cell types using SingleR
?
Thank you for help.
• 2.4k views
Read more here: Source link