 
|
This package is for version 3.0 of Bioconductor;
for the stable, up-to-date release version, see
ensemblVEP.
R Interface to Ensembl Variant Effect Predictor
Bioconductor version: 3.0
Query the Ensembl Variant Effect Predictor via the perl API
Author: Valerie Obenchain <vobencha at fhcrc.org>,
Maintainer: Valerie Obenchain <vobencha at fhcrc.org>
Citation (from within R,
enter citation("ensemblVEP")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ensemblVEP")
Documentation
To view documentation for the version of this package installed
in your system, start R and enter:
browseVignettes("ensemblVEP")
Details
| biocViews | Annotation, Software |
| Version | 1.6.2 |
| In Bioconductor since | BioC 2.12 (R-3.0) (3 years) |
| License | Artistic-2.0 |
| Depends | methods, BiocGenerics, GenomicRanges, VariantAnnotation |
| Imports | Biostrings |
| LinkingTo | |
| Suggests | RUnit |
| SystemRequirements | Ensembl VEP (API version 78) and the Perl package DBD::mysql must be installed. See the package README and Ensembl web site, www.ensembl.org/info/docs/tools/vep/index.html for installation instructions. |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow
Installation instructions to use this
package in your R session.
Read more here: Source link