This package is for version 3.9 of Bioconductor;
for the stable, up-to-date release version, see
seqCAT.
High Throughput Sequencing Cell Authentication Toolkit
Bioconductor version: 3.9
The seqCAT package uses variant calling data (in the form of VCF files) from high throughput sequencing technologies to authenticate and validate the source, function and characteristics of biological samples used in scientific endeavours.
Author: Erik Fasterius [aut, cre]
Maintainer: Erik Fasterius <erik.fasterius at outlook.com>
Citation (from within R,
enter citation("seqCAT")):
Installation
To install this package, start R (version
“3.6”) and enter:
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("seqCAT")
For older versions of R, please refer to the appropriate
Bioconductor release.
Documentation
To view documentation for the version of this package installed
in your system, start R and enter:
browseVignettes("seqCAT")
| seqCAT: The High Throughput Sequencing Cell Authentication Toolkit | ||
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Coverage, GenomicVariation, Sequencing, Software, VariantAnnotation |
| Version | 1.6.3 |
| In Bioconductor since | BioC 3.6 (R-3.4) (2 years) |
| License | MIT + file LICENCE |
| Depends | R (>= 3.6), GenomicRanges(>= 1.26.4), VariantAnnotation(>= 1.20.3) |
| Imports | dplyr (>= 0.5.0), GenomeInfoDb(>= 1.13.4), ggplot2 (>= 2.2.1), grid (>= 3.5.0), IRanges(>= 2.8.2), lazyeval (>= 0.2.0), methods, rlang, scales (>= 0.4.1), S4Vectors(>= 0.12.2), stats, SummarizedExperiment(>= 1.4.0), tidyr (>= 0.6.1), utils |
| LinkingTo | |
| Suggests | knitr, BiocStyle, rmarkdown, testthat, BiocManager |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report |
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Installation instructions to use this
package in your R session.
Read more here: Source link
