converting annovar format file to maf by annovarToMaf

converting annovar format file to maf by annovarToMaf

0

Hi,

I have annovar format file and want to convert it to maf , and to this aim, I use the annovarToMaf:

library(maftools)
var.annovar <- system.file("extdata", "ann_test.txt", package = "maftools")
var.annovar.maf <- annovarToMaf(annovar = "ann_test.txt", 
                                Center="CSI-NUS", refBuild = 'hg19', 
                                table="refGene", MAFobj = TRUE )

But no .maf file is created by this code. How can I get the output as a maf file?

Thanks for any help.


maftools


annovarToMaf


ANNOVAR


MAF

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