Converting .1 or .man files from NCBI SRA to fastq
Hi there,
Sorry if this is a stupid question, but I’m hoping someone can help me. I’m trying to access fastq files from the SRA run browser (see this link: trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3138122). However, all 53 samples seem to be contained in one file when I download it which is a .1 extension. Has anyone had any experience with opening this to access the fastq files or converting it in to the correct format? I also tried to download it using Amazon Web Services (AWS), but again this just gives me a .man extension which I am not sure what to do with. Any help with this issue would be greatly appreciated, I am new to all of this and apologies if it is an easy fix.
Thanks.
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Skrew the terrible SRA website, just enter the accession at sra-explorer.info and get ftp links for the fastq files:
wget ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR313/002/SRR3138122/SRR3138122_1.fastq.gz
wget ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR313/002/SRR3138122/SRR3138122_2.fastq.gz
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