Understandig of some bbmerge command line settings
Hi,
In the bbmerge
documentation there are two pairs of the parameters:
minoverlap
andminoverlap0
minoverlap=12 Minimum number of overlapping bases to allow merging.
minoverlap0=8 Overlaps shorter than this will not be considered.
mininsert
andmininsert0
mininsert=35 Minimum insert size to merge reads.
mininsert0=35 Insert sizes less than this will not be considered.
I’m a bit confused with the differences of the parameters meaning within each of the pairs. E.g. to me the meaning of minoverlap
and minoverlap0
is similar. Could you please explain the difference in meaning between the minoverlap
and minoverlap0
and between the mininsert
and mininsert0
for me?
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