Understandig of some bbmerge command line settings
bbmerge documentation there are two pairs of the parameters:
minoverlap=12 Minimum number of overlapping bases to allow merging.
minoverlap0=8 Overlaps shorter than this will not be considered.
mininsert=35 Minimum insert size to merge reads.
mininsert0=35 Insert sizes less than this will not be considered.
I’m a bit confused with the differences of the parameters meaning within each of the pairs. E.g. to me the meaning of
minoverlap0 is similar. Could you please explain the difference in meaning between the
minoverlap0 and between the
mininsert0 for me?
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