Remove genes in a list from cts

@bine-23912

Last seen 15 minutes ago

Spain

Dear all,

I hope someone can help me with this as I just cant figure it out. I have my DESEQ2 object cts, which includes all my genes. Now I only want to look at 100 genes, which are in the list “risk_genes”.

I tried with cts_new <- cts[cts %in% risk_genes,] but then I am left with 0 genes.

What am I doing wrong?

Thank you so much for any help!!

Bine