0 + 0 mapped when used flagstat

0 + 0 mapped when used flagstat

1

I’ve downloaded bam files from ENA, and tried samtools flagstat to confirm mapping.

But the result was like this. How do I interpret this?

Should I download fastq files?enter image description here

Thanks


mapping


RNA-seq

• 23 views

You may have downloaded unaligned BAM (uBAM) files. Yes there is such a thing where fastq files are converted to BAM without aligning them. You will need to convert the BAM files back to fastq and align them yourself.


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