Convert VCF file to mpileup
I am working on an iterative analysis that uses mpileup.txt files as input for a visualization step. This requires me to convert VCF files to mpileup.txt.
There are plenty of examples for using samtools and bcftools to produce an intermediate mpileup file that is then converted to a finalized fitered vcf file.
But I can’t find much direction for converting a vcf file to an mpileup. Can anybody provide direction for this task?
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