Peak callers such as macs
can use BED files that contain read coordinates to return peak lists.
Something basically like:
macs2 callpeak -t that_bed_file.bed -f BED
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Open Source Biology & Genetics Interest Group
Open source tools and preprints for in vitro biology, genetics, bioinformatics, crispr, and other biotech applications.
Open Source Biology & Genetics Interest Group
Open source tools and preprints for in vitro biology, genetics, bioinformatics, crispr, and other biotech applications.
Peak callers such as macs
can use BED files that contain read coordinates to return peak lists.
Something basically like:
macs2 callpeak -t that_bed_file.bed -f BED
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Traffic: 2658 users visited in the last hour
Read more here: Source link
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