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Open Source Biology & Genetics Interest Group

Open source scripts, reports, and preprints for in vitro biology, genetics, bioinformatics, crispr, and other biotech applications.

 Posted in Research

ChIP-seq Peak calling from BED or WIG file

 October 5, 2021

ChIP-seq Peak calling from BED or WIG file

1

Peak callers such as macs can use BED files that contain read coordinates to return peak lists.

Something basically like:

github.com/macs3-project/MACS

macs2 callpeak -t that_bed_file.bed -f BED


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