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This edition of the Herald was brought to you by contribution from Istvan Albert,
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pyrpipe: a Python package for RNA-Seq workflows (www.ncbi.nlm.nih.gov)
pyrpipe: a Python package for RNA-Seq workflows
see also:
submitted by: Istvan Albert
RNACocktail (bioinform.github.io)
A comprehensive framework for accurate and efficient RNA-Seq analysi
submitted by: Istvan Albert
GitHub – Ranlot/single-parameter-fit: Real numbers, data science and chaos: How to fit any dataset with a single parameter (github.com)
An amusing piece of mathematical ingenuity
Real numbers, data science and chaos: How to fit any dataset with a single parameter
submitted by: Istvan Albert
Technology dictates algorithms: recent developments in read alignment | Genome Biology | Full Text (genomebiology.biomedcentral.com)
We provide a rigorous experimental evaluation of 11 read aligners to demonstrate the effect of these underlying algorithms on speed and efficiency of read alignment. We discuss how general alignment algorithms have been tailored to the specific needs of various domains in biology.
submitted by: Istvan Albert
Choice of pre-processing pipeline influences clustering quality of scRNA-seq datasets | BMC Genomics | Full Text (bmcgenomics.biomedcentral.com)
However, standard pre-processing, including the alignment and cell filtering pipelines might not be ideal for every organism or tissue.
submitted by: Istvan Albert
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