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This package is for version 3.2 of Bioconductor;
for the stable, up-to-date release version, see
rGREAT.
Client for GREAT Analysis
Bioconductor version: 3.2
This package makes GREAT (Genomic Regions Enrichment of Annotations Tool) analysis automatic by constructing a HTTP POST request according to user’s input and automatically retrieving results from GREAT web server.
Author: Zuguang Gu
Maintainer: Zuguang Gu <z.gu at dkfz.de>
Citation (from within R,
enter citation("rGREAT")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("rGREAT")
Documentation
To view documentation for the version of this package installed
in your system, start R and enter:
browseVignettes("rGREAT")
| Analyze with GREAT | ||
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Coverage, GO, GeneSetEnrichment, GenomeAnnotation, Pathways, Sequencing, Software, WholeGenome |
| Version | 1.2.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (1 year) |
| License | GPL (>= 2) |
| Depends | R (>= 3.1.2), GenomicRanges, IRanges, methods |
| Imports | rjson, GetoptLong (>= 0.0.9), RCurl, utils |
| LinkingTo | |
| Suggests | testthat (>= 0.3), knitr, circlize |
| SystemRequirements | |
| Enhances | |
| URL | github.com/jokergoo/rGREAT |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow
Installation instructions to use this
package in your R session.
Read more here: Source link
