filtering results by a minimum % of identity and % coverage

BLASTp command line : filtering results by a minimum % of identity and % coverage

0

Hi all,

I use regularly BLASTp analysis and I would like to improve my command line so that only resulting hits with 60% of similarity and 60 % of coverage appear in the output file.

For the coverage, I use the following option that works great :

-qcov_hsp_perc 60

However, does anyone know what is the option to filter reads over 60% of similarity using blast directly?

I usually do it manually using an awk command but I would rather use blast to filter the resutls directly if possible.

Thank you very much for your help and advice!


filtering


command


BLASTp


results


line

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