DOI: 10.18129/B9.bioc.genotypeeval
This package is for version 3.10 of Bioconductor;
for the stable, up-to-date release version, see
genotypeeval.
QA/QC of a gVCF or VCF file
Bioconductor version: 3.10
Takes in a gVCF or VCF and reports metrics to assess quality of calls.
Author: Jennifer Tom [aut, cre]
Maintainer: Jennifer Tom <tom.jennifer at gene.com>
Citation (from within R,
enter citation("genotypeeval")
):
Installation
To install this package, start R (version
“3.6”) and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("genotypeeval")
For older versions of R, please refer to the appropriate
Bioconductor release.
Documentation
To view documentation for the version of this package installed
in your system, start R and enter:
browseVignettes("genotypeeval")
genotypeeval_vignette.html | ||
Reference Manual | ||
Text | NEWS | |
Text | LICENSE |
Details
biocViews | BatchEffect, DataImport, Genetics, SNP, Sequencing, Software, VariantAnnotation |
Version | 1.18.0 |
In Bioconductor since | BioC 3.2 (R-3.2) (4.5 years) |
License | file LICENSE |
Depends | R (>= 3.4.0), VariantAnnotation |
Imports | ggplot2, rtracklayer, BiocGenerics, GenomicRanges, GenomeInfoDb, IRanges, methods, BiocParallel, graphics, stats |
LinkingTo | |
Suggests | rmarkdown, testthat, SNPlocs.Hsapiens.dbSNP141.GRCh38, TxDb.Hsapiens.UCSC.hg38.knownGene |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
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Installation instructions to use this
package in your R session.
Read more here: Source link