Is there any tool to combine CAGE-seq data, Iso-seq data and RNAseq data?

Is there any tool to combine CAGE-seq data, Iso-seq data and RNAseq data?

0

Hi,
currently, I am trying to build an accurate transcript model of non-model species.

I have performed CAGE-seq, Iso-seq and strand specific RNA-seq on the same sample.

The problem is, the Iso-seq library kit my service provider used did not employ 5′ cap selection.Thus, 5′ sequences of my Iso-seq data were incomplete.

Now, I am wondering if CAGE-seq and strand-specific RNA-seq data could complement the Iso-seq data.

However, so far I have not found tools which can integrate CAGE-seq and other seq data.

Is there any tool to combine CAGE-seq data, Iso-seq data and RNAseq data?

Any suggestions would be appreciated.

Thanks,
freddiejung


CAGE-seq


Iso-seq


RNA-seq

• 12 views

Read more here: Source link