Bioconductor – PWMEnrich

DOI: 10.18129/B9.bioc.PWMEnrich  

This package is for version 3.11 of Bioconductor;
for the stable, up-to-date release version, see
PWMEnrich.

PWM enrichment analysis

Bioconductor version: 3.11

A toolkit of high-level functions for DNA motif scanning and enrichment analysis built upon Biostrings. The main functionality is PWM enrichment analysis of already known PWMs (e.g. from databases such as MotifDb), but the package also implements high-level functions for PWM scanning and visualisation. The package does not perform “de novo” motif discovery, but is instead focused on using motifs that are either experimentally derived or computationally constructed by other tools.

Author: Robert Stojnic, Diego Diez

Maintainer: Diego Diez <diego10ruiz at gmail.com>

Installation

To install this package, start R (version
“4.0”) and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("PWMEnrich")

For older versions of R, please refer to the appropriate
Bioconductor release.

Documentation

To view documentation for the version of this package installed
in your system, start R and enter:

browseVignettes("PWMEnrich")

Details

Package Archives

Follow
Installation instructions to use this
package in your R session.