Mapping contigs back to samples from co-assembled metagenome.
In an attempt to increase the quality of our metagenomic assembly and ensure we capture low abundance species we are co assembling ~20 samples. However after the assembly we need to perform some analysis based on the samples, thus I need to map contigs back to a samplewhere reads map to that contig from said sample. Is there a tool that can do this (I cant find one) or will I have to do it myself? If so at that coverage of a contig should I assign said contig to a sample?
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