lncRNA quantification featurecounts

lncRNA quantification featurecounts

0

Hi everyone, I want to analyze the differential expression of lncRNA using TCGA data processed with RSubread (FPKM and TPM, gene-level data, see here: www.ncbi.nlm.nih.gov/pmc/articles/PMC4804769/).

Is there any way to filter only lncRNA gene IDs from the output of featurecounts? And would it be relevant to use the values (counted with gene id) in the DE analysis of lncRNA?

Thank you in advance.


featurecounts


TCGA


lncRNA


DE

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