Bioconductor – JctSeqData

DOI: 10.18129/B9.bioc.JctSeqData  

 

This package is for version 3.9 of Bioconductor;
for the stable, up-to-date release version, see
JctSeqData.

Example Junction Count data for use with JunctionSeq

Bioconductor version: 3.9

Junction count data from an example dataset taken from a subset of the RNA-seq reads from six samples. Data was subsampled and modified to provide edge cases for testing and to reduce file sizes.

Author: Stephen Hartley [aut, cre] (PhD)

Maintainer: Stephen Hartley <JunctionSeq-contact at list.nih.gov>

Citation (from within R,
enter citation("JctSeqData")):

Installation

To install this package, start R (version
“3.6”) and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("JctSeqData")

For older versions of R, please refer to the appropriate
Bioconductor release.

Documentation

To view documentation for the version of this package installed
in your system, start R and enter:

browseVignettes("JctSeqData")

 

PDF

Example Walkthrough
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews ExperimentData, GEO, Genome, RNASeqData, Rattus_norvegicus_Data, RepositoryData
Version 1.14.0
License file LICENSE
Depends R (>= 3.3)
Imports
LinkingTo
Suggests knitr, BiocStyle, DESeq2, DEXSeq, edgeR, JunctionSeq
SystemRequirements
Enhances
URL hartleys.github.io/JunctionSeq/
BugReports github.com/hartleys/JunctionSeq/issues
Depends On Me
Imports Me
Suggests Me JunctionSeq
Links To Me
Build Report  

Package Archives

Follow
Installation
instructions to use this
package in your R session.


Read more here: Source link