Error with indexing! STAR unable to access genome file SOS

Error with indexing! STAR unable to access genome file SOS

0

I keep receiving the error:
EXITING because of INPUT ERROR: could not open genomeFastaFile: –

Does anyone know why this could be?

The code I run:

STAR --runMode genomeGenerate  --genomeDir /scratch/e51/trial2/align/sequence/STARindex  --genomeFastaFiles /scratch/e51/trial2/align/sequence/genome/GRCm39.ens.fa  --runThreadN 12

I provide the full path, and I checked for permissions ( the fasta file is -rw-rw-r– 1). I can’t pinpoint what’s wrong. Any help would be appreciated!
(Also I’m a somewhat beginner so forgive any errors in terminology)


STAR


bioinformatics


rna-seq


sequencing

• 32 views


15 minutes ago by


eag

0

Read more here: Source link