Error with indexing! STAR unable to access genome file SOS
I keep receiving the error:
EXITING because of INPUT ERROR: could not open genomeFastaFile: –
Does anyone know why this could be?
The code I run:
STAR --runMode genomeGenerate --genomeDir /scratch/e51/trial2/align/sequence/STARindex --genomeFastaFiles /scratch/e51/trial2/align/sequence/genome/GRCm39.ens.fa --runThreadN 12
I provide the full path, and I checked for permissions ( the fasta file is -rw-rw-r– 1). I can’t pinpoint what’s wrong. Any help would be appreciated!
(Also I’m a somewhat beginner so forgive any errors in terminology)
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