fasterq-dump only downloads certain runs?
I wrote a script in python that gets the SRR ids from a SRP id and then downloads all FASTQ files for every SRR.
How can it only work on some SRRs?
For example, SRP000124 provides these:
and downloads the FASTQ files as it should.
But, SRP234963 which provides much more SRRs:
SRR10600874 SRR10600875 . . . SRR10600943 SRR10600944
gets stuck in the first SRR (SRR10600874) download.
Nothing crashes, it just gets stuck after executing the fasterq-dump command and waits forever.
The actual command is
"fasterq-dump " + srr_id + ' --split-3' + ' -O /output/'
Any information you can provide for me will be much appreciated,
as you can tell this is my first project in this subject.
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